Never mind, just figured it out. I can go to the ftp site and do wget: ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE39nnn/GSE39977/suppl/
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27 Jun 2012 One command can download the entire site onto your computer. Downloading specific files in a website's hierarchy (all websites within a certain If you are using a Linux system, you should already have wget installed. The easiest is to install a package manager and use it to automatically install wget.
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